Los Angeles Dodgers Logo

In 1989, the Padres took the scripted Padres logo that was used from 1985 to 1988 and put it in a tan ring that read "San Diego Baseball Club" with a striped center. In 1991, the logo was changed to a silver ring with the Padres script changed from brown to blue. The logo only lasted one year, as the Padres changed their logo for the third time in three years, again by switching colors of the ring. The logo became a white ring with fewer stripes in the center and a darker blue Padres script with orange shadows. In 1991, the team's colors were also changed, to a combination of orange and navy blue.

For the 2001 season, the Padres removed the stripes off their jerseys and went with a white home jersey with the Padres name on the front in navy blue. The pinstripe jerseys were worn as alternate jerseys on certain occasions throughout the 2001 season. The Padres kept this color scheme and design for three seasons until their 2004 season, in which they moved into their new ballpark.

The logo was completely changed when the team changed stadiums between the 2003 and 2004 seasons, with the new logo looking similar to home plate with San Diego written in sand font at the top right corner and the Padres new script written completely across the center. Waves finished the bottom of the plate. Navy remained but a sandy beige replaced orange as a secondary color. The team's colors were also changed, to navy blue and sand brown. The San Diego was removed from the top right corner of the logo for the 2011 season, and the away uniform changed from sand to gray.

For the 2012 season, the Padres unveiled a new primary logo, featuring the cap logo inside a navy blue circle with the words "San Diego Padres Baseball Club" adorning the outer circle. The "swinging friar" logo was recolored to the current colors of navy blue and white. Another secondary logo features the Padres script carried over from the previous year's logo below the depiction of Petco Park in sand and above the year of the team's first season (EST. 1969). The blue and sand version will be used in the home uniforms, with the blue and white version to be used on the away and alternate uniforms.

For the 2016 season, San Diego will switch to a blue and yellow color scheme, similar to the concept of the 2016 MLB All Star Game logo. Also for the 2016 season San Diego added a new brown and yellow alternate uniform to be worn mostly during Friday home games.